Publications
Journal
- Guangming Tan, Ping Liu, Dongbo Bu and Yanbing Liu, Revisiting Multiple Pattern Matching Algorithms for Multi-core Architecture, Journal of Computer Science and Technology, 2011.
- Ninghui Sun, Jing Xing, Zhigang Huo, Guangming Tan, Jin Xiong, Bo Li, Can Ma, Dawning Nebulae: A PetaFLOPS Supercomputer with a Heterogeneous Structure. Journal of Computer Science and Technolgy. 26(3): 352-362 (2011)
- Guangming Tan, Vugranam C. Sreedhar and Guang R. Gao. Analysis and Performance Results of Computing
Betwenness Centrality on IBM Cyclops64, The Journa of Supercomputing, Volume 56, Number 1, pp. 1-24, 2011
- Guangming Tan, Ninghui Sun and Guang R. Gao. Improving Performance
of Dynamic Programming via Parallelism and Locality on Multi-core Architectures. IEEE Transactions
on Parallel and Distributed Systems, Vol.20, No.2, 2009, pp. 261-274.PDF
- Guangming Tan, Shengzhong Feng and Ninghui Sun. Cache Oblivious Algorithms for Nonserial Polyadic Dynamic Programming. The Journal of Supercomputing, Vol. 39, No. 2, 2007, pp. 227-249.
- Guangming Tan, Lin Xu, Zhenhua Dai, Shengzhong Feng, Ninghui Sun. A Study of Architectural Optimization Methods in Bioinformatics Applications. International Journal of High Performance Computing Applications, Vol. 21, No. 3, 2007, pp. 371-384.
- Guangming Tan, Lin Xu, Dongbo Bu, Shengzhong Feng, Ninghui Sun. Improvement of Performance of MegaBlast Algorithm for DNA Sequence Alignment. Journal of Computer Science and Technology, 2006, Vol. 21, No. 6, pp. 973-978.
- 谭光明，冯圣中，孙凝晖， RNA二级结构预测中动态规划的优化和有效并行，软件学报, 17 (7):1501-1509 ,2006
- 徐琳，李晓民， 谭光明， 刘新春，卜东波， 冯圣中， 孙凝晖，面向FPGA的RNA二级结构预测并行算法研究，计算机学报，2：233－238，2006
- 冯圣中， 谭光明，徐琳，孙凝晖，徐志伟，曙光4000H生物信息处理专用计算机的高性能算法研究，计算机研究与发展，43（6）：1053 －1058，2005
Conference
2011
SC
- Guangming Tan, Linchuan Li, Sean Triechle, Everett Phillips, Yungang Bao, Ninghui Sun, Fast Implementation of DGEMM on Fermi GPU, ACM/IEEE Supercomputing (SC'11), 2011.PDF code
HPDC
- Linchuan Li, Xingjian Li, Guangming Tan, Peiheng Zhang, Mingyu Chen, Experience of Parallelizing cryo-EM 3D Reconstruction on a CPU-GPU Heterogeneous System, the 20th ACM Symposium on High Performance on Parallel and Distributed Computing (HPDC'11), 2011.
CF
- Liu Peng, Aiichiro Nakano, Guangming Tan, Rajiv K.Kalia, Priya Vashishta, Fenglong Song, HaoZhang, Dongrui Fan, Performance Analysis and Optimization of Molecular Performance Analysis and Optimization of Molecular Dynamics Simulation on Godson-T Many-core Processor, ACM International Conference on Computing Frontiers (CF'11), 2011.
ICS
- Licheng Chen, Yongbing Huang, Yungang Bao, Onur Mutlu, Guangming Tan, Mingyu Chen, Poster: revisiting virtual channel memory for performance and fairness on multi-core architecture. 25th ACM International Conference on Supercomputing (ICS) 2011,pp.379
2010
EuroPar
- Liu Peng, Guangming Tan, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta, Dongrui Fan, Ninghui Sun: Preliminary Investigation of Accelerating Molecular Dynamics Simulation on Godson-T Many-Core Processor. Euro-Par Workshops 2010: 349-356
ICPADS
- Jiajia Li, Guangming Tan, Mingyu Chen: Automatically Tuned Dynamic Programming with an Algorithm-by-Blocks. International Conference on Parallel and Distributed Systems (ICPADS) 2010,pp.452-459
2009
ICPP
- Guangming Tan, Dengbiao Tu, Ninghui Sun. A Parallel Algorithm for Computing Betweenness Centrality. To appear in the 38th International Conference on Parallel Processing (ICPP-2009), 2009.PDF code
EuroPar
- Nan Yuan, Yongbin Zhou, Guangming Tan, Junchao Zhang, Dongrui Fan. High Performance Matrix Multiplication on Many-cores. in Euro-Par 2009. PDF
ISPA
- Dengbiao Tu, Guangming Tan. Characterizing Betweenness Centrality Algorithm on Multi-core Architectures. in the 2009 IEEE International Symposium on Parallel and Distributed Processing with Applications (ISPA'09), 2009.PDF
ICS
- Guangming Tan, Ziyu Guo, Mingyu Chen, Dan Meng. Single-particle 3D Reconstruction from Cryo-Electron Microscopy Images on GPU. 23rd ACM International Conference on Supercomputing (ICS'09), 2009, pp.380-389.PDF
2008
LCPC
- Guangming Tan, Vugranam Sreedhar, Guang Gao. Just-In-Time Locality and Percolation for Optimizing Irregular Applications on a Manycore Architecture. 21st Annual Languages and Compilers for Parallel Computing Workshop (LCPC'08), 2008.
PPoPP
- Guangming Tan, Dongrui Fan, Junchao Zhang, Andrew Russo, Guang R. Gao. Experience on Optimizing Irregular Computation for Memory Hierarchy in Manycore Architecture (poster paper). 13th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming (PPoPP'08). 2008.
2007
SPAA
- Guangming Tan, Ninghui Sun, Guang R. Gao. A Parallel Dynamic Programming Algorithm on a Multi-core Architecture. 19th Annual ACM Symposium on Parallelism in Algorithms and Architectures (SPAA'07), 2007, pp.135-144.
2006
SC
- Guangming Tan, Shengzhong Feng and Ninghui Sun. Locality and Parallelism Optimization for Dynamic Programming Algorithm in Bioinformatics. ACM/IEEE Supercomputing (SC'06), 2006, CD-ROM.
EuroPar
- Guangming Tan, Liu Peng, Shengzhong Feng, Ninghui Sun. Load balancing and Parallel Multiple Sequence Alignment with Tree Accumulation.Euro-Par'06, 2006, LNCS 4128, pp.1138-1147.
IPDPS
- Guangming Tan, Lin Xu, Shengzhong Feng, Ninghui Sun. An Experimental Study of Optimizing Bioinformatics Applications. Proceedings of the 20th IEEE International Parallel Distributed Processing Symposium (IPDPS'06), IEEE Computer Society, 2006.
2005
- Guangming Tan, Shengzhong Feng, Ninghui Sun. Parallel Multiple Sequences Alignment in SMP Cluster, In Proceedings of 8th HPC-AISA, IEEE Computer Society, 2005, pp. 426-431.
- Guangming Tan, Shengzhong Feng, Ninghui Sun. Load Balancing Algorithm in Cluster-based RNA secondary structure Prediction, Proceedings of the 4th International Symposium on Parallel and Distributed Computing, IEEE Computer Society, pp. 91-96, 2005
- Guangming Tan, Xinchun Liu, Ninghui Sun. An Efficient Dynamic Programming Algorithm and Implementation for RNA Secondary Structure Prediction, ICCS 2005, LNCS 3515, pp.869-876,2005
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